Frontiers in Plant Sciences 2016
Tutorials

Tutorials on protein-coding-gene evolution and detecting natural selection
Exercises and Solutions

View the Project on GitHub gattil/2016_FiPS_Tutorials

Welcome to Frontiers in Plant Sciences 2016
Tutorials in computational molecular evolution


Herewith you will find a set of exercises/step-by-step guides on common problems in molecular evolution as:

  1. Inferring phylogenetic trees
  2. Detecting natural selection on protein coding genes

You can download the entire repository containing exercises, datasets, step-by-step solutions and results from the Github repository


How to use PhyML and PaML

  1. First steps with PhyML
  2. First steps with PaML

Exercises and Solutions

  1. Tutorial 01: Using PhyML for inferring phylogenetic trees | Exercises | Solutions
  2. Tutorial 02: Using PaML for detecting natural selection | Exercises | Solutions

Licence

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. Except as contained in this notice, the name(s) of the above copyright holders and institutions shall not be used to endorse or promote products derived from this software without specific prior written permission.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.


Support or Contact

Having trouble with the exercises or our solutions? Contact us and we’ll help you sort it out.